LAIRHUB Publications

Title

Author

Journal

Year

Action

Collaboration, self-reflection, and adaptation in robot communities: using multi-agent distributed learning for coordination planning

Javed Mostafa and Weimao Ke

Proceedings of the IEEE International Conference on Cognitive Machine Intelligence

(CogMI), Pittsburgh, PA, USA

2022

Data science curriculum in the iField.

Zhang, Y., Wu, D., Hagen, L., Song, I.-Y., Mostafa, J., Oh, S., Anderson, T., Shah, C., Bishop, B. W., Hopfgartner, F., Eckert, K., Federer, L., & Saltz, J. S.

Journal of the Association for Information Science

and Technology

2022

Health recommender systems

development, usage, and evaluation from 2010 to 2022:A scoping review

Yao, C.*⇤ , Yu, F., Kumar, M.*, Gladney, R.*, & Mostafa, J

International

Journal of Environmental Research and Public Health,

2022


Cohort identification from free-text clinical notes using SNOMED CT’s hierarchical semantic relations

Eunsuk Chang and Javed Mostafa

Annual

Meeting of the American Medical Informatics Association, Washington DC, USA.

2022

Age-related Difference in Conversational Search Behavior: Preliminary Findings

Zhaopeng Xing, Xiaojun Yuan and Javed Mostafa

CHIIR: ACM SIGIR

Conference on Human Information Interaction and Retrieval, New York, NY, USA

2022

The use of SNOMED CT 2013-2020: A literature review. 

Chang, E.*, & Mostafa,

Journal of American Medical Informatics Association

2021

A systematic review of automatic text summerization for biomedical literature and EHRs.

Wang, M.*, Yu, F., Yang, Y., Walker, J., & Mostafa

Journal of American

Medical Informatics Association

2021

Machine-learning and medication adherence:

Scoping review.

Bohlmann, A.*, Mostafa, J., & Kumar, M.*

Journal of Medical Internet Research

2021

Standard health data exchange model enables the use and reuse of data to improve maternal health programs: A case study from India.

Kumar, M.*, & Mostafa, J.

Journal of Global Health Reports

2021

Innovative UX methods for information access based on interdisciplinary

approaches: Practical lessons from academia and industry

Yu, F., Ruel, L., Tyler, R., Xu, Q., Cui, H.*, Karanasios, S., Nguyen, B., Keilbach, A., & Mostafa, J.

Data and Information Management

2020

Electronic health records for better health in the lower and middle-income countries: A landscape study.

Kumar, M.*, & Mostafa, J.

Library Hi Tech

2020

Understanding voice search behavior:

Review and synthesis of research.

Zhaopeng, X.*, Wu, D., Huang, Y., & Mostafa, J.

Human-Computer Interaction

2020

Perennial, permuted, and pervasive search in

ambient intelligence

Mostafa, J., Lu, X.*, & Avula, S*.

IEEE First International Conference

on Cognitive Machine Intelligence (CogMI), Los Angeles, CA, USA

2019

Dynamic cluster-based retrieval

and discovery for biomedical literature

Ortiz, M.*, Kim, H.*, Wang, M.*, Seki, K., & Mostafa, J.

10th ACM

International Conference on Bioinformatics, Computational Biology and Health Informatics

(BCB ’19). New York, NY, USA.

2019

Relating task demand, mental e↵ort and task difficulty with physicians’ performance during interactions with electronic health records (EHRs)

Mosaly, P., Mazur, L., Yu, F., Guo, H., Derek, M., Laidlaw, H., Moore, C., Marks, L., & Mostafa, J

International Journal of Human-Computer Interaction

2018

Machine-learning classifier for discerning performance levels of physicians evaluating MRI brain scans for early-stage Alzheimer’s disease.

Mostafa, J., Hong,Y., Yue, W., Kaufer, D., Mosaly, P., & Mazur, L.

10th International

Conference on Applied Human Factors and Ergonomics, Washington, DC.

2019

2019

Effectiveness and efficiency for document clustering in biomedicine.

Kazuhiro Seki, Michael Segundo Ortiz and Javed Mostafa

IEEE International Conference on Bioinformatics

and Biomedicine (BIBM), San Diego, CA, USA, 2019

2019

Physicians’ perception
of alternative displays of clinical research evidence for clinical decision support –
A study with case vignettes.

Slager, S.*, Weir, C., Kim, H., Mostafa, J., & Del Fiol, G.

Journal of Biomedical Informatics, 71(supplement):
53-59.

2017

Deepening the role of the user: Neuro-physiological evidence as a basis for studying and improving search

Jacek Gwizdk, Javed Mostafa 

ACM Conference on Human Information Interaction and Retrieval, Chapel Hill,

NC, USA. 2016

2016

Scalability analysis of distributed search in large peerto-peer networks. I

Weimao Ke,Javed mostafa

EEE International Conference on Big

Data (Big Data)

2016

Formative evaluation of a patient-specific clinical knowledge summarization tool.

Del Fiol, G., Mostafa, J., Pu, D., Medlin, R.*, Slager, S.*, Jonnalagadda, S, & Weir,
C.

International Journal of Medical Informatics, 86: 126-134.

2015

Text summarization in the biomedical domain: A systematic review of recent research

Mishra, R.*, Bian, J., Fiszman, M., Weir, C., Jonnalagadda, S., Mostafa, J., & Del Fiol, G.

Journal of Biomedical Informatics, 0:457-467.

2014

Emergency medical text classifier: New system improves processing and
classification of triage notes.

Haas, S., Travers, D., Waller, A., Mahalingam, D.*, Crouch, J., Schwartz, T., & Mostafa, J.

Online Journal of Public Health Informatics, 16(6):
1-19. 

2014

Automatic identification of comparative
effectiveness research from Medline citations to support clinicians’ treatment information needs.

Zhang M., Del Fiol G., Grout R., Jonnalagadda, S., Medlin, R.*, Mishra, R., Weir C., Liu, H.*, Mostafa, J., & Fiszman M.

Studies in Health Technology Informatics, 846-50.

2013

The secure
medical research workspace: An IT infrastructure to enable secure research on clinical data.

Shoffner, M., Owen, P., Mostafa, J., Lamm, B., Wang, X., & Schmitt, C.

Clinical & Translational Sciences Journal, 6(3):222-5.

2013

Studying the clustering paradox and scalability of search in highly distributed environments.

Ke, W.*, & Mostafa, J.

ACM Transactions on Information Systems,
31(2):1-40.

2013

Implementation of emergency medical text classifier for syndromic surveillance.

Travers, D., Haas, S., Waller, E., Schwartz, A., Mostafa, J., Best, N., & Crouch,J.

AMIA Annual Symposium

2013

Anonymous record linkage between EPR and
CDW-H: Toward development of a federated genotype-phenotype System

Dongqiuye Pu,Stavros Garantziotis, Javed Mostafa,

AMIA Joint Summits on Translational Science

2013

Automatically extracting sentences from Medline citations to support clinicians’ information needs.

Jonnalagadda, S., Del Fiol, G., Medlin, R.*, Weir, C., Fiszman, M., Mostafa, J., &
Liu, H*.

Journal of the American Medical Informatics Association,
20(5):995-1000.

2012

Automatically extracting sentences from Medline citations to support
clinicians’ information needs.

Siddhartha Reddy Jonnalagadda, Guilherme Del Fiol, Richard Medlin,Charlene Weir, Marcelo Fiszman, Javed Mostafa, Hongfang Liu

IEEE Conference on Health Care Informatics, Imaging, & Systems Biology, UCSD, 2012

2012

Patient electronic
health data-driven approach to clinical decision support.

Mane, K., Bizon C, Owen, P, Gersing, K, Mostafa, J., & Schmitt. C.

Clinical & Translational
Science Journal, 4(5):369-71.

2011

Scalability of findability: Efficient and effective retrieval operations in large information networks.

Weimao Ke, Javed Mostafa

33nd Annual

international ACM SIGIR Conference on Research & Development in Information

Retrieval, Zurich, Switzerland. 2010

2010

The North Carolina Translational and Clinical Sciences Institute: Activities of the biomedical informatics core.

Mostafa, J., & Moore, C.

Clinical & Translational
Science Journal, 3(3):71-2.

2010

Beyond information retrieval: Literature mining for biological knowledge discovery.

Mostafa, J., Seki, K.*, & Ke, W.

In Jake Chen, Stefano Lonardi, and Randi Cohen
(Eds.), Biological Data Mining Chapman & Hall/CRC Press. [Invited chapter].

2009

Dynamicity vs. effectiveness: Studying online clustering for scatter-gather.

Weimao Ke, Cassidy R. Sugimoto, and Javed Mostaf

Annual international

ACM SIGIR Conference on Research & Development in Information Retrieval,

Boston, MA. 2009

2009

Teaching digital library concepts using digital library applications

Jeffrey Pomerantz , June Abbas, Javed Mostafa

International Journal on Digital Libraries, 10(1), 1-13. 2009

2009

Finding explicit and implicit knowledge:

Biomedical text data mining

Seki, K , Mostafa, J., & Uehara, K. 

In Leon Wang and Tzung-Pei Hong (Eds.), Intelligent

Soft Computation & Evolving Data Mining. IGI Global. 2009

2009

Strong ties vs. weak ties: Studying the clustering paradox for decentralized search

Weimao Ke, Javed Mostafa

7th Workshop on Large-Scale

Distributed Systems for Information Retrieval (LSDS- IR09) in conjunction with the

32nd Annual International ACM SIGIR Conference on Research & Development in

Information Retrieval, Boston, MA. 2009

2009

Toward responsive visualization services for scattergather browsing.

Weimao Ke, Javed Mostafa, and Yong Liu

71st Annual Meeting of the American

Society for Information Science & Technology, Columbus, OH. 2009

2009

Collaborative expertise retrieval: A referral approach to finding distributed experts.

Weimao K, Javed Mostafa

Workshop on Future Challenges in

Expertise Retrieval (fCHER) held in conjunction with the 31st Annual International

ACM SIGIR Conference on Research & Development in Information Retrieval, Singapore, 2008

2008

Computer supported Work for cataloging and
management in digital libraries

Weimao Ke, Javed Mostafa, and Gayathri S. Athreya

71st Annual Meeting of

the American Society for Information Science & Technology. 2008

2008

Gene ontology annotation as text categorization: An empirical study

Seki, K and Javed Mostafa

Information Processing & Management, 44(5), 1754-1770. 2008

2008.

Literature-based discovery by an enhanced information retrieval model.

Kazuhiro Seki, Javed Mostafa

10th International Conference on Discovery

Science (DS 2007), Sendai, Japan. 2007

2007

Discovering implicit associations between genes and hereditary diseases.

Seki, K.*, & Mostafa, J.

In the Proceedings of the 12th Pacific Symposium on Biocomputing, Kona,
HI.

2007

Collaborative Classifier Agents: Studying the Impact of Learning in Distributed Document Classification

Weimao Ke,Javed Mostafa,Yueyu Fu

7th ACM/IEEE-CS Joint Conference on Digital Libraries, Vancouver, BC, Canada.

2007

2007

Discovering implicit associations between genes and hereditary
diseases.

Seki K. & Mostafa, J

12th Pacific Symposium on Biocomputing, Kona,

HI. 2007

2007

 A privacy enhancing infomediary for retrieving personalized health information from the web.

Yingang, L.*, Mostafa, J., & Wang, X.

In the Proceedings of the 2nd Personal Information Management Workshop held in conjunction with the SIGIR Conference on Research and Development in Information Retrieval, Seattle, WA.

2006

Distributed Multi-Agent InformationFiltering—A Comparative Study

S. Mukhopadhyay, S. Peng, and R. Raje, M. Palakal and Javed Mostafa

Cluster Computing, 7(2004), 373-389. 2004

2005

A hybrid approach to protein name identification in biomedical texts

Seki, K.  and Javed Mostafa

Information Processing & Management

2005

Automated Text Classification Using a Multi-Agent Framework

Yueyu Fu, Weimao Ke and Javed Mostafa

5th ACM+IEEE Joint Conference on Digital

Libraries, Denver, CO. 2005

2005

Advanced Information Retrieval Web Services for Digital Libraries

Weimao Ke, Yueyu Fu and Javed Mostafa

library Collections, Acquisition, & Technical Services, 29(2), 220-224. 2005

2005

Seeking better web searches

Javed Mostafa

Scientific American, 292(2), 66-73. 2005

2004

Simulation Studies of Different Dimensions of Users’ Interests and their Impact on User Modeling and Information Filtering

Javed Mostafa, Snehasis Mukhopadhyay, and Mathew Palakal 

Information Retrieval, 6(2), 199-224. 2003

2003

Multi-Agent Information Classification Using Dynamic Acquaintance Lists

Snehasis Mukhopadhyay, Shengquan Peng, Rajeev Raje, and Mathew Palakal and Javed Mostafa

IEEE Heterogeneous Computing Workshop

2003

Protein Association Discovery in Biomedical Literature


Yueyu Fu, Javed Mostafa, and Kazuhiro Seki

ACM+IEEE Joint Conference on Digital Libraries,

Houston, TX. 2003

2003

Topic Detection and Interest Tracking in a Dynamic Online News Source

Andrew J. Kurtz and Javed Mostafa

ACM+IEEE Joint Conference on Digital

Libraries, Houston, TX. 2003

2003

Multi-Agent Information Classification Using Dynamic Acquaintance Lists

Snehasis Mukhopadhyay, Shengquan Peng, Rajeev Raje, and Mathew Palakal

IEEE Heterogeneous Computing Workshop. 2001

2003

A Probabilistic Model for Identifying Protein Names and their Name Boundaries

Kazuhiro Seki and Javed Mostafa

IEEE Computer Society Bioinformatics

Conference, Stanford University, Stanford, CA. 2003

2003

Concept Extraction and Association from Cancer Literature

Yueyu Fu, Travis Bauer and Javed Mostafa

ACM CIKM Workshop on Web Data Management, McLean, VA. 2002

2002

An experiment in building profiles in information filtering: the role of context of user relevance feedback

Luz M. Quiroga and Javed Mostafa 

Information Processing & Management,

38(5), 671-694. 2002

2002

An intelligent biological information management system

Mathew Palak, Snehasis Mukhopadhyayand Javed Mostafa

BioInformatics, 18(10), 1283-

1288. 2002

2002

Homogeneous agent-based distributed information filtering

Rajeev R. Raje, Mingyong Qiao, Snehasis Mukhopadhyay, Mathew Palakal, and Shengquan Peng

Cluster Computing,

5(4), 377-388. 2002

2002

Multi-Agent Information Classification Using Dynamic Acquaintance Lists

Snehasis Mukhopadhyay, Shengquan Peng, Rajeev Raje, and Mathew Palakal

2003

Modelling user interest shift using a Bayesian approach

Wai Lam and Javed Mostafa

Journal of the American Society for Information Science & Technology

2001

A Heterogeneous Agent Society for Information Filtering

Rajeev R. Raje, Mingyong Qiao, Snehasis Mukhopadhyay and Javed Mostafa

16th ACM Symposium

on Applied Computing. 2001

2001

Detecting Gene Relations from Medline Abstracts 

M. STEPHENS, M. PALAKAL, S. MUKHOPADHYAY, R. RAJE

Pacific

Symposium on Biocomputing, Kona, HI. 2001

2001

Automatic classification using supervised learning in a medical document filtering application

W. Lam and Javed Mostafa

Information Processing & Management

2000

A Multilevel Approach to Intelligent Information Filtering: Model, System, and Evaluation

J. MOSTAFA, S. MUKHOPADHYAY
and M. PALAKAL

ACM Transactions

on Information Systems

1997

Filtering medical documents using automated

and human classification methods

L. M. Quiroga, J. Mostafa and M. Palakal

Journal of the American Society for Information

Science

1998

A bidding mechanism for Web-based agents involved in information classification

Rajeev R. Raje , Snehasis Mukhopadhyaya, Michael Boyles , Artur Papiez , Nila Patel a,

Mathew Palakal  and Javed Mostafa 

WWW Journal

1998